Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------LKIKKILPQTIKSEVYFIDEIKNFDIV--------TEKMNDNFYTYRLG--SNVMMWLNDEGVIGEIECIFP----AQIDNLITLWEEKNTVVQNGFPMIDTDIVENKTFIPK-V------RIFNHG-DYFILY--FSNMYKYNKEIISENLT-FYAKDTELIAIKAELT
4N6C Chain:A ((2-183))
GHHHHHHSHMLRTYENKEELKAEIEKTFEKYILEFDNIPENLKDKRADEVDRTPAENLAYQVGWTNLVLKWEEDERKGLQVKTPSDKFKWNQLGELYQWFTDTYA--HLSLQELKAKLNENINSISAMIDSLSEEELFEPHMRKWADEATKTATWEVYKFIHVNTVAPFGTFRTKIRKWKKIVL
General information:
TITO was launched using:
RESULT:
Template:
4N6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18538 for 936 contacts (-19.8/contact) +
2D Compatibility (PS) -14355 + (NN) 4164 + (LL) 384
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -30995.0 ( -33.11 by residue)
QMean score : 0.024
(partial model without unconserved sides chains):
PDB file :
Tito_4N6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N6C-query.scw
PDB file :
Tito_Scwrl_4N6C.pdb
: