Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKS-KFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRP-LKGEVINYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
4FOT Chain:A ((4-188))
ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQIN--
General information:
TITO was launched using:
RESULT:
Template:
4FOT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122939 for 1559 contacts (-78.9/contact) +
2D Compatibility (PS) -18894 + (NN) 1467 + (LL) 304
1D Compatibility (HY) -12800 + (ID) 3400
Total energy: -156262.0 ( -100.23 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_4FOT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FOT-query.scw
PDB file :
Tito_Scwrl_4FOT.pdb
: