Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILVIDVGNTNCTVGVYEKQKLLKHWRMTTDRHRTSDELGMTVLNFFSYANLTP------SDIQGIIISSVVPPIMHAMETMCVRYFNIRPLIVGPGIKTG-LNLKVDNPREIGSDRIVNAVAASEEYGTPVIVVDFGTATTFCYIDESGVYQGGAIAPGIMISTEALYNRAAKLPRVDIAESSQIIGKSTVSSMQAGIFYGFVGQCEGIIAEMKKQSNASPVVVATGGLARMITEKSSAVDILDPFLTLKGLELLYRRNKPTTEK
3BEX Chain:F ((4-242))
MYLLVDVGNTHSVFSITEDGKTFRRWRLSTGVFQTEDEL---------FSHLHPLLGDAMREIKGIGVASVVPTQNTVIERFSQKYFHISPIWVKA--KNGCVKWNVKNPSEVGADRVANVVAFVKEYGKNGIIIDMGTATTVDLV-VNGSYEGGAILPGFFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRIKEVYGDLPVVL-TGGQSKIVKDMIKH-EIFDEDLTIKGV-------------
General information:
TITO was launched using:
RESULT:
Template:
3BEX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175066 for 1841 contacts (-95.1/contact) +
2D Compatibility (PS) -24924 + (NN) -7799 + (LL) 1768
1D Compatibility (HY) -21600 + (ID) 4500
Total energy: -232121.0 ( -126.08 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_3BEX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BEX-query.scw
PDB file :
Tito_Scwrl_3BEX.pdb
: