Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
3UDE Chain:A ((3-134))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR----ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3UDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106728 for 950 contacts (-112.3/contact) +
2D Compatibility (PS) -13790 + (NN) -6643 + (LL) 2808
1D Compatibility (HY) -11200 + (ID) 2700
Total energy: -138253.0 ( -145.53 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3UDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDE-query.scw
PDB file :
Tito_Scwrl_3UDE.pdb
: