Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTIQQLVKHVSVREFKN-ERLSDETKQHLLTAARSASSSHFVQSFSILEITDEKLRKELAEITNSASYVNQTGTFYVFVGDLYRQSKLLLEN-----N----------RTL--DGL---RNMESLLVSVIDATIAAQNMVIAAESLDLGICYIGGIRNDIGKVAELLNLPPFTIPVFGLTVGVPEYKNQVKPRLLLENQVGENQYPHEQFTDLKAYEELTKDYYALREKNQHQTSWGDKNVEFFEEIRRPEIASFLKKQGFTLD
3GAG Chain:A ((3-205))
MNDYLNFLDGRVSVRRFDPDAVLPNDLIKDMLEHASYAPSGNNFQPWRVVVVKNKNKQEDLKKLAALQPQVATASAVFLLFGDENAYDLTWWQEFHVQKGIITKDEAAARAERIRQYFDLHPEDKETQGLRLDVGLFAMNLMQVVRVYGYDSVPMRGV--DFDAIKTYLDMPNGWEPILMLPVGKALQAGNPHVRKSVAEFAEII-------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100487 for 1311 contacts (-76.6/contact) +
2D Compatibility (PS) -19957 + (NN) -11246 + (LL) 4384
1D Compatibility (HY) -8000 + (ID) 1500
Total energy: -136806.0 ( -104.35 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_3GAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GAG-query.scw
PDB file :
Tito_Scwrl_3GAG.pdb
: