Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKSRWLLILLLLIVLVALSACEDSGNGDISGAPAKMEKQHFPPTDTKKGWIELLATDGISSQDNLPCVYEEAESVEKLEVHMKELSTASLTYIYIDGHIVQMEQGGDELSFQIQLSKTELRKGIHELAVVQYQENNPETKKVEFLKRANYEVKQIKND
2WAA Chain:A ((52-102))
------------------------------------------------------------------------------LTAEMQSSNGNSWIDVIIDNHPPTSIKLDA-QQQTVEL-FHFPNSGEHRVEII----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2WAA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14754 for 271 contacts (-54.4/contact) +
2D Compatibility (PS) -5137 + (NN) 2531 + (LL) 7228
1D Compatibility (HY) -400 + (ID) 450
Total energy: -10982.0 ( -40.52 by residue)
QMean score : -0.109
(partial model without unconserved sides chains):
PDB file :
Tito_2WAA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WAA-query.scw
PDB file :
Tito_Scwrl_2WAA.pdb
: