Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTDKKSENQTEKTETKENKGMTRREMLKLSAVAGTGIAVGATGLGTILNVVDQVDKALTPKEKAETGVPFYASNQAGIITAQQTYCYIASFDIQTESRQILQDLFVKWTKFADLTTSGGVLRDVDNDMLPPNDTGEADGLGISNFTVTLGYGPTFFEKDGKDRFGVKAKKPKYLEKIPHMAHDSLDEAYSDGDLCIQVCADDQQVAFHGIRNFIRLASGVAVVRWIEEGFLSAPKNETPRNLFGFKDGTANVDHDSNKGYKDVVWAEKDEPEWMRNGSYLGYRKIQMLIEIWDRSSLLDQEDTFGRKKASGAPYHKKHEHDKVDPSKLPADSHVRLAKDT-----KQQMHRRAYSYTNGIDKSTGTIDAGLLFICFTQNPAKQFLPMLSIMGK------MDKLNEYTVPIGSAMFACQGGLAPGEIFGEKLL |
2IIZ Chain:A ((8-307)) | -----------------------------------------------------------------------PREQLGVCAEGNLHSVYLMFNANDNVESQLRPCIANVAQYIYELTDQY---------------------SDSAFNGFVAIGANYWDSL------YPESRPEMLKPFPAMQEGNREAPAIEYDLFVHLRCDRYDILHLVANEISQMFEDLVELVEEERGFRFM----DSRDLTGFVDGTENPKGR---HRQEVALVGS-EDPEFKGGSYIHVQKYAHNLSKWHRLPLKKQEDIIGRTKQDNIEYES---------EDKPLTSHIKRVNLKDENGKSIEILRQSMPYGSL-------KEQGLMFISTCRTP-DHFEKMLHSMVFGDGAGNHDHLMHFTSALTGSSFFAPSLDFL--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IIZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95433 for 2409 contacts (-39.6/contact) +
2D Compatibility (PS) -30049 + (NN) -7522 + (LL) 5544
1D Compatibility (HY) -8400 + (ID) 3000
Total energy: -138860.0 ( -57.64 by residue)
QMean score : 0.343
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