Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDL-DIEPADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQHLIIKGVHPSPLAASRGFFGSKPFSKTNAFLEEHERKPIDWDLNEQ
1SSP Chain:E ((6-220))
--ESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDW-----
General information:
TITO was launched using:
RESULT:
Template:
1SSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105968 for 1798 contacts (-58.9/contact) +
2D Compatibility (PS) -23099 + (NN) -13309 + (LL) 644
1D Compatibility (HY) -21200 + (ID) 5450
Total energy: -168382.0 ( -93.65 by residue)
QMean score : 0.719
(partial model without unconserved sides chains):
PDB file :
Tito_1SSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSP-query.scw
PDB file :
Tito_Scwrl_1SSP.pdb
: