Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDVVEWRVDFFEDVKDLAKVEAALGEIRAILPETPILFTFRSAKEGGELAVSDEFYFELNETLAGTGKIDLVDVELFNEEADVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTRMEALGADLPKIAVMPKSAGDVLTLLDATNTVFEK-ANQPIITMSMAGTGVISRLAGEVFGSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF
4GFS Chain:B ((4-254))
MKTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVK---APGQISVADLRTVLTILHQ--
General information:
TITO was launched using:
RESULT:
Template:
4GFS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137813 for 2082 contacts (-66.2/contact) +
2D Compatibility (PS) -27422 + (NN) -12639 + (LL) 432
1D Compatibility (HY) -25200 + (ID) 6900
Total energy: -209542.0 ( -100.64 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4GFS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GFS-query.scw
PDB file :
Tito_Scwrl_4GFS.pdb
: