Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVG--------------KRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIII-----GRLACDGEADLPTVRELQEQLKITPLNEGKEV-DGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLV----KQESFAPIGLMEKGVSPYSNPSEELKNALIEGAKAGLANIKKATTNFKSENGWGLTQH------LFDYNADFFE-IGTKKSLDWVIEDREEAYIIRAVSAITALWGNHG------YEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCE---NPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYH--FPGFEKK-- |
| 4GC0 Chain:A ((5-479)) | -YNSSYIFSITLVATLGGLLFGYDTAVISG--------TVESLNTVFVAPQNLSESAANSLLGFCVA--SALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM-GNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4GC0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 16030 for 3752 contacts (4.3/contact) +
2D Compatibility (PS) -43030 + (NN) 19118 + (LL) 784
1D Compatibility (HY) -10000 + (ID) 2400
Total energy: -19498.0 ( -5.20 by residue)
QMean score : 0.100
|
|
|