Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------MEYFLSLLKII--------VLLAVLAGISYF--LVKKNK-------QANRTRKSENDLIKLKDTLLI----SHQLRAVLLEADGEKVLAIISNNDIR-----------------TVSLKGKNDQNEKLFRELLLKEETKENA
4YN9 Chain:A ((7-159))
RTSIEQRSNAVSQVLLGIFSYVRWPKEPAVLQLCVVGPTEYADGLLRGMVQANGRRVHAERRAVDNPDLGTLSNVIYLGVVDERERQQVFRSLAGHPVLSISERGTECSVGSMFCLNVGGPRITFEANLDSIARSGVRVHPSVLKLARRQATP
General information:
TITO was launched using:
RESULT:
Template:
4YN9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51616 for 671 contacts (-76.9/contact) +
2D Compatibility (PS) -11306 + (NN) -4947 + (LL) 0
1D Compatibility (HY) -6400 + (ID) 850
Total energy: -75119.0 ( -111.95 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_4YN9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YN9-query.scw
PDB file :
Tito_Scwrl_4YN9.pdb
: