Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSFQALFIEKEADN-------------TSLHFRETTIDNLPENEVTIEVHYSGINYKDGLAVLPD-------------GK----IVSEYPFIPGIDASGVVVNSK--SDQFQVGDEVIVTSYDFGV---------------------SYFGGYSEFIRVPAEWVVPLPDGLSLKEAMILGTAGFTAALSVDALEFSGVTPNAGKIAVSGATGGVGSLSSAILSKRGFSVVASSGKSDAKEFLEKFGVSEIVSREAF-------------------QPEKVRALDKQLYAGAIDCVGGKPLSYLLTAVQYGGAVTTCGMSAGGKLDTTVFPFILRGIQLFGIDSVLCPMSKRERIWNRLA-TDYKLTNLESLATEIAFSELPESLHQVMNGGVTGRYLVKVK |
| 3KRT Chain:A ((28-421)) | PESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQG-DNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHF--ANYREAWEANRLIAKGRIHP--T--LSKVYSLEDTGQAAYDVHRNLHQGKVGVLC- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3KRT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -191535 for 2892 contacts (-66.2/contact) +
2D Compatibility (PS) -34131 + (NN) -4173 + (LL) 624
1D Compatibility (HY) -4000 + (ID) 3100
Total energy: -236315.0 ( -81.71 by residue)
QMean score : 0.518
|
|
|