Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVKVVFVCLGNICRSPMAEGLFRKEVANAGLTDEIKIDSAATGTWNLGKPPHRGTQEVLKKHGVDYQAMRARKISDADFKEADFIIGMDQQNLADLNALNNNPDVI--IRSLMSFVSGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK
2CWD Chain:D ((5-149))
-VRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGA-YFPHVARRLTREDVLAYDHILVMDRENLEEV--LRRFPEARGKVRLVLEELGGGE---VQDPYY-GDLEDFREVYWTLEAALQAFLDR-
General information:
TITO was launched using:
RESULT:
Template:
2CWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68763 for 1208 contacts (-56.9/contact) +
2D Compatibility (PS) -15708 + (NN) -8446 + (LL) 192
1D Compatibility (HY) -13600 + (ID) 2900
Total energy: -109225.0 ( -90.42 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_2CWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CWD-query.scw
PDB file :
Tito_Scwrl_2CWD.pdb
: