Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG--LHITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG-KFPLPLEVIPFGWKQVERKLEKEHIQTNLRK--QSSGEVYVTNNGNYILDIVNQTFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANGEIELIKK
1LK5 Chain:D ((7-223))
----KKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMPVPIEVIPQAWKAIIEELSIFNAKAELRMGVNKDGPV-ITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREG-------
General information:
TITO was launched using:
RESULT:
Template:
1LK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90240 for 1831 contacts (-49.3/contact) +
2D Compatibility (PS) -23171 + (NN) -7499 + (LL) 1464
1D Compatibility (HY) -18800 + (ID) 4400
Total energy: -142646.0 ( -77.91 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_1LK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LK5-query.scw
PDB file :
Tito_Scwrl_1LK5.pdb
: