Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------------------------MTETRTEKKKKTTSTFTKVMKIASVAL-----------LGIIFFSITGLAAKYYI---TVQNTFSKINVPL---ESSNKTLSDLEKKKPFSVLLMGSDARAGEKNGRADTIILATANK-QQNAVEMVSIPRDTKVDYGNGDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINMEGFKDLVDAVGGITVYNDIDLTEVNSKFVKGNITLNGTEALQYVRIRHEDPRGDFGRQ------------------DRQRDVIIGIANK-------VISSSGVSNFESIMKAVGDNFQTNMTLTDITSMAANYSSVLKNVDSQELKGEGEMIYSESYGFDLYYFA---PDKTDLERIITMFKKS------LDITE |
| 2IUT Chain:A ((70-477)) | LPPLSLLDPAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSVHPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQMVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPH--LLVAGTT-GSG-KSVGVNAMLLSILFKSTPSEARLIMI-----------DPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVR------NLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQ--VSSKIDSRTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2IUT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -39308 for 2141 contacts (-18.4/contact) +
2D Compatibility (PS) -30343 + (NN) 2228 + (LL) 648
1D Compatibility (HY) -10800 + (ID) 2450
Total energy: -80025.0 ( -37.38 by residue)
QMean score : 0.215
|
|
|