Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSQMSILEKIKDAGVVGCGGAGFPTHAKF-SGEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDASVTIHEMDNVYPTGD-EQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKL-------NDQSTIADKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCPRQQLGHDIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACPMGLSPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLEKMHYLEVDEVFIPTKMHI-GAPSIPVVSEGDIVKKGDLIAKIPDTALGANIHASIDGQIIRITEEQVHIKKVMS |
| 4USR Chain:A ((1-357)) | ---GPAMPPILDVIVIGGGQAALTTAYFLRRTSLSYLLLDE----------------------------QPGPGGAWLH---------AWDSLRLFSPAAWSSIAGWPMPSPTEPGNPTRNDVIDYLRRYEDRYQFPIQRPVRVDTVTRLDDLWRVQAGD-----QQWLARAVISATGTWSKPFIPPYE-GRELFQGAQIHSAHYRTPAPFAGKRVMVVGGGNSGAQVLAELSSVSETLWITQEPPAFL------------PDEVDGRVLFERATARWKAQQEGRSIDEP--------AGGFGDIVMVPPVREARER------GVLVAERPFA----------RFTETGVEWADGRRENL-------------DAVIWCSGFRPALDHLRELGVVEADGKVQVEDTRVVKQPNLWLVGYGDWTGMA----SATLIGVTRTARSTADQVVQALTATP-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4USR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90101 for 2804 contacts (-32.1/contact) +
2D Compatibility (PS) -35362 + (NN) 3100 + (LL) 10092
1D Compatibility (HY) -6000 + (ID) 2950
Total energy: -121221.0 ( -43.23 by residue)
QMean score : 0.138
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