Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNDKLPASVLSVKVVSNVDNGLFKQLDLKPHQRSLGIITSDCDDVTYTALDEATKAAEVDVVYAKSMYAGAGNASTKFAGEVIGIIAGPSPAEVKSGLAVAVDFIENGASFVSANEDDSVPYFAHCVSRTGTFLSKEANVAEGEAIAYLIAPPLEAMYALDAALKAADVTIGAFYGPPSETNFGGALLTGSQSACKAACDAFKMAVENVAENPLQY
4FDZ Chain:C ((1-217))
MKNDLIRPNVLSVKIISNVSPEMAKKLELEPHHKSLGLITADCDDVTYTALDEATKAAEVDVVYARSMYAGAGNASTKLAGEVIGILAGPSPAEVRSGLNATLDFIDSGVGFVSANEDDSICYYAQCVSRTGSYLSKTAGIREGEALAYLVAPPLEAMYALDAALKAADVEMCEFFAPPTETNFAGALLTGSQSACKAACDAFAEAVQSVASNPLGF
General information:
TITO was launched using:
RESULT:
Template:
4FDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129347 for 1851 contacts (-69.9/contact) +
2D Compatibility (PS) -23638 + (NN) -13668 + (LL) 0
1D Compatibility (HY) -25600 + (ID) 7950
Total energy: -200203.0 ( -108.16 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_4FDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FDZ-query.scw
PDB file :
Tito_Scwrl_4FDZ.pdb
: