Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKININVILILLVVLLMVSPFFFNKTGEYGGSDGEAEAEITKIDPSYEPWFEPLYEPKSGEIESLLFTLQGCIGTGIIAYVIGVSRGKRKAENDVNH
2QMF Chain:A ((101-164))
------NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLV--KQTHVPN-LFSLQLC-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7250 for 284 contacts (-25.5/contact) +
2D Compatibility (PS) -6955 + (NN) -2755 + (LL) 2152
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -19158.0 ( -67.46 by residue)
QMean score : 0.033
(partial model without unconserved sides chains):
PDB file :
Tito_2QMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QMF-query.scw
PDB file :
Tito_Scwrl_2QMF.pdb
: