Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------VATKKKTFEEAIAELETIVEALENGSASLEDSL---DMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE
2LW1 Chain:A ((551-635))
KAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG-
General information:
TITO was launched using:
RESULT:
Template:
2LW1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5862 for 441 contacts (13.3/contact) +
2D Compatibility (PS) -8169 + (NN) -2378 + (LL) 104
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -8681.0 ( -19.68 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_2LW1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LW1-query.scw
PDB file :
Tito_Scwrl_2LW1.pdb
: