Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKSRFFSDVAETSSFVFAVAGADDEVVLETIRLALKQKLGKFLLFGKKEDKTLTANESVTWIQTDTAEAAAQGAILAVKNKEADILVKGFIPTATLM-HHVLKKENGLRTDQLLSQIAIFDIPTYHKPLLITDCAM-NVAPKTKEKIAITENALAVAHQIGITNPKIALLSAVEEVTAKM-PSTLEAQEVVQHFGNQISVSGPLALDVAISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLVYFAGAKVGSAVVGAKVPIVISSRNDSPENKLASFILTVRLVEK
3TNG Chain:A ((5-291))
-TKSRFFSDVAETSSFVFAVAGADDEVVLETIRLALKQKLGKFLLFGKKEDKTLTANESVTWIQTDTAEAAAQGAILAVKNKEADILVKGFIPTATL-MHHVLKKENGLRTDQLLSQIAIFDIPTYHKPLLITDCA-MNVAPKTKEKIAITENALAVAHQIGITNPKIALLSAVEEVT-AKMPSTLEAQEVVQHFGNQISVSGPLALDVAISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLVYFAGAKVGSAVVGAKVPIVISSRNDSPENKLASFILTVRLVEK
General information:
TITO was launched using:
RESULT:
Template:
3TNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -199420 for 2454 contacts (-81.3/contact) +
2D Compatibility (PS) -30880 + (NN) -16103 + (LL) 768
1D Compatibility (HY) -36800 + (ID) 14100
Total energy: -296535.0 ( -120.84 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_3TNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TNG-query.scw
PDB file :
Tito_Scwrl_3TNG.pdb
: