Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LNERIFRENTRPVQVGNLTIGGSEELTIQSMTTTKTHDVEATVAEIHRLEEAGCQIVRVACPDERAANALSAIKKK-----IHIPLVADIHFDYRLALK---AIDAGVDKIRINPGNIGRRDRVE---KVVNAAKAKNIPIRIGVNAGSLEKKIIQKYGYPTA-------------DGMVESAL-AHIKILE-DLDFYDIIVSLKASDVNLAIEAYDKASRAFNYPLHLGITESGTQFAGGIKSAAGLGAILSLGIGNTLRVSLSADPVE----EIKVAREVLKSFGLSSNAAMLISCPTCGRIEIDLIR-IANEVENYIAKIEVP-----------IKVAVLGCAVNGPGEAREADIGI----AGSNGEGLLFRHGKIIRKVPEAIMIDELKKEIDILAEEFFVKKIDLESLR |
| 2Y0F Chain:B ((4-378)) | -----MRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPG--------EHFAEMIRIAMDLGKPVRIGANWGSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARRTQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPSPKEPRTKEVEVAQEILQALGLRAFAPEVTSCPGCGRTTSTFFQELAEEVSRRL-KERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPGAGEEPKAPVYADGKLL---------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y0F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158411 for 2494 contacts (-63.5/contact) +
2D Compatibility (PS) -35845 + (NN) -23836 + (LL) 4632
1D Compatibility (HY) -24800 + (ID) 6750
Total energy: -245010.0 ( -98.24 by residue)
QMean score : 0.517
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