Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIGIIGAMEEEVELLKNSMSSVEEIVIGGAKFYIGEIASKEVVLLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDVTEFGYTYGQVPRMPAFYQGDAVLLKKAETIYREYFATSENKAVYGLVVTNDSFIMRPDQHEIIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLAAKQSATCIIELLKTI
4F1W Chain:B ((17-241))
MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIREL----NLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS-TLMVETL---
General information:
TITO was launched using:
RESULT:
Template:
4F1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159759 for 2015 contacts (-79.3/contact) +
2D Compatibility (PS) -24494 + (NN) -12384 + (LL) 764
1D Compatibility (HY) -23600 + (ID) 6000
Total energy: -225473.0 ( -111.90 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_4F1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F1W-query.scw
PDB file :
Tito_Scwrl_4F1W.pdb
: