Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVNNVELIISAVRPEQYPETDLPEYALAGRSNVGKSSFINTMIRRKSMARISQKPGKTQTLNFYKIEEALFFVDVPGYGFAKVSKTEREKWGVMIETYITSREQLRGVIQIVDLRHKPTEDDRMMYEFLKYYDIPVIVIATKADKIPRSKWQKNAKIVRETLDFDPDDKFVLFSSETKMGKDEAWQFIKEGME
1SVI Chain:A ((14-193))
-------------KPEQYPEGGLPEIALAGRSNVGKSSFINSLINR-------------QTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI-
General information:
TITO was launched using:
RESULT:
Template:
1SVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102889 for 1290 contacts (-79.8/contact) +
2D Compatibility (PS) -17985 + (NN) -7612 + (LL) 2108
1D Compatibility (HY) -20000 + (ID) 6150
Total energy: -152528.0 ( -118.24 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1SVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVI-query.scw
PDB file :
Tito_Scwrl_1SVI.pdb
: