Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAERLVGTQAPRFEMEAVMPNQTFGKVSLEKNIEDDKWTILFFYPMDFTFVCPTEIVAISARSDEFDALNARIIGASTDTIHSHLAWTNTPIKEGGIGKLNYPLAADTNHQVASDYGVLIEEEGVALRGLFIINPKGEIQYEVVHHNNIGREVDEVLRVLQALQ----TGGLCPINWQPGEKTIV
3SBC Chain:D ((25-200))
-----VQKQAPTFKKTAVV-DGVFDEVSLDKY--KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATI-
General information:
TITO was launched using:
RESULT:
Template:
3SBC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121148 for 1390 contacts (-87.2/contact) +
2D Compatibility (PS) -18234 + (NN) -6189 + (LL) 1076
1D Compatibility (HY) -17200 + (ID) 4600
Total energy: -166295.0 ( -119.64 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_3SBC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SBC-query.scw
PDB file :
Tito_Scwrl_3SBC.pdb
: