Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MKKTPFIISGIGLLGFIFFMTGVMTGAKWIQRFDHYWNSVIRVGITDTKTTVISYLTDIGGVATICILTAIIIIVFVFMRKVDTAIWFGSIVLIGGALIPSIIK-NIVQRPRPTYKLIEQGGFSFPSGHSTGSTVFYGMLAFLLILYVSRSWLRFTIGILALGIVIFVMYSRVYLGVHFPSDVVAGFLIGNAALFSGIGCYFIWNEKLALWANKFKKA
4LEU Chain:A ((71-252))
KLIGKEALFVILGLKRL------------KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE-------TALAIKMFEVIQKQE---WYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENL-FPD--------------SQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPE-ELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEE-
General information:
TITO was launched using:
RESULT:
Template:
4LEU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183916 for 1369 contacts (-134.3/contact) +
2D Compatibility (PS) -17502 + (NN) 8773 + (LL) 3052
1D Compatibility (HY) -4000 + (ID) 1650
Total energy: -195243.0 ( -142.62 by residue)
QMean score : 0.184
(partial model without unconserved sides chains):
PDB file :
Tito_4LEU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LEU-query.scw
PDB file :
Tito_Scwrl_4LEU.pdb
: