Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VLQTEMKVIQQTEIADKVYELILTGECV-AGMSPGQFLMLKPSRSDLLMRRPISICSYDKTAKTCILLYRVEG--DGTRDFSKLSEGDTIDVLGPLGKGFDIDTTPAPKTALLIGGGIGVPPMYQLGKELAEKGVQVMFVNGFQSAKDSFYAQEMAEYG--TVHIATVDGSLGTQGFVTDITKNFPEEPDVIYSCGPKAMLQAVKASFPET-KTYLSLEERMACGIGACYACVCPKADDTNKQFKVCEDGPVFRADEVKL
1EP3 Chain:B ((4-262))
-LQEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGCQMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVGMLMNEIDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDESHALKVCEDGPVFLGKQLSL
General information:
TITO was launched using:
RESULT:
Template:
1EP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156486 for 2167 contacts (-72.2/contact) +
2D Compatibility (PS) -27510 + (NN) -10740 + (LL) 192
1D Compatibility (HY) -29200 + (ID) 5800
Total energy: -229544.0 ( -105.93 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1EP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EP3-query.scw
PDB file :
Tito_Scwrl_1EP3.pdb
: