Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLCENENAYRRRNSGNLEIEMSEITLRNRKPKRKIGKWIAIILGIIIVLVVAAFLYFRYAEKPVTNAETEALDRISGQVDLKTTDQFYLYNGPKEVYYVLTGKNSKNKNIIVWVPKKKSDKVYVKFASDGITEQQARDKVTKEKKPKKILHVNLG--MEKETPIWEV--AYLDKNDKLNYFDINFETGEWYREIENL
2JH2 Chain:A ((7-139))
------------EVTGSVSLEALE--------EVQVGENLEVGVGIDELVNAEAF----------------------------AYDFTLNYDENAFEYVEAISDDG----VFVNAKKIEDGKVRVLVSS--LTGEPL-------PAKEVLAKVVLRAEAKAEGSNLSVTNSSVGDGEG-LVHEIAGTEKTVNIIE---
General information:
TITO was launched using:
RESULT:
Template:
2JH2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61783 for 969 contacts (-63.8/contact) +
2D Compatibility (PS) -13391 + (NN) 1046 + (LL) 4244
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -73834.0 ( -76.20 by residue)
QMean score : 0.211
(partial model without unconserved sides chains):
PDB file :
Tito_2JH2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JH2-query.scw
PDB file :
Tito_Scwrl_2JH2.pdb
: