Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVAISGGGTGGHVYPALALIRELKKS-HPEAEFLYIGTEKGL--EAGIVKREGIPFE-AIEITGFKRSLSLENIKTVMRFLSGAKKSKQILRDFKPDVVIGTGGY-VCGPVVYAAAKLKIPTLIHEQNSVAG---------LTNKFLSRYTDKVAICFEEVSDSF-----ASEKIVFTGN-PRASEVVGVDSEGALEAYGLVSGKPTVLVFGGSRGARGVNEAVEAVLPEWNNR--DFQLLYVTGDVHYEKIKDSLAELNLGNHISVQPFI--YDMPKILNAVTLVVSRAGATTLAELTALGVPSILI-PSPYVTANHQENNARALEKNNAAIVITE-AELKNTDLMATVDSILNDEAKLNSMKLSAKQMGRPDAAAKLVEAVLSIMK |
| 1V4V Chain:A ((6-365)) | KRVVLAFGTRPE-ATKMAPVYLALRGIPG--LKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQ--ERQ---AL--PDLAARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAKLG-RLPEGLP-EGPYVTVTMH-RRENWPLLSDLAQALKRVAEAFPHLTF-VYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDSG-GLQEEGAALGVPVVVLRNVTER--------PEGL-KA--GILKLAGTDP--EGVYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V4V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155566 for 2843 contacts (-54.7/contact) +
2D Compatibility (PS) -35955 + (NN) -13330 + (LL) 1180
1D Compatibility (HY) -8000 + (ID) 2500
Total energy: -214171.0 ( -75.33 by residue)
QMean score : 0.443
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