Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------MFLGLRELVYSK-------------------LRYILVTGIMVLIMLLSLILSGLANGLAYDNASSVADNGVPYYVLSKDAQDKLSRSQFPESKLADVKKDANVKDAAVLGQSMQTLKRESDDKKFSVALFGIQPDSF-LAPKISDGANIQVTKPDEIVVDSSLKSDGIKIGDVLMDDILNRELTVVGFTENQKYSHAPVVYINIATWQEINPVLYHQKIPQTSTIAIKTENPDKGVTLTDKDLTTIDHKEFLNQIPGYSAEQMTLNMMIFFLIIIGGF--------------------ILTAFFYVMTLQKTTQFGILKALGTKTSYLV---KSIITQV-----VIISIISILISVGVTLILPSIMPAAMPFRLSPMTIALYSGLFFLVALFGALLSLRRIAKVDALDAIRGGDE------ |
| 3RKI Chain:A ((26-508)) | QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQSAIASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPIT--NDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71278 for 2139 contacts (-33.3/contact) +
2D Compatibility (PS) -37903 + (NN) 2691 + (LL) 384
1D Compatibility (HY) 2400 + (ID) 2700
Total energy: -106406.0 ( -49.75 by residue)
QMean score : 0.041
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