Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHET-TWLHEAAAGTIEPEKLMYPLDKVVNDTKTTFIQD-TVVKINKDEKTVTLDANGDISYDYLLIALGSEAET-FGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTGIEFLGELTNRIPELVKQYDVPREKVRIYCMEAAPKVLPQ-FDAKLVDYGVGVLEDRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVRGNSVIEA-SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRP-FPPTAQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGVLASKGKFKFYK |
2GQW Chain:A ((6-309)) | -LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD---CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLR------------PQSRLLIVGGGVIGLELAATARTA-------------GVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-DGVVLLDD--G-TRIAADMVVVGIGVLANDALARAAGLA-CDDGIFVDAYGRT-TCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPT---------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181812 for 2468 contacts (-73.7/contact) +
2D Compatibility (PS) -32315 + (NN) -14372 + (LL) 5872
1D Compatibility (HY) -11200 + (ID) 2950
Total energy: -236777.0 ( -95.94 by residue)
QMean score : 0.534
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