Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VEAKLQVGVLGFGTVGSGVIHILEEHQEKISQVTGYNISVKKVLVRDLEKNRR----Y------ETKGFELTTNPSDVLDDPEIAVVVEVMGS-ITTAREYILQALKAGKHVVTANKDLIALHGDELVAVAQANNCDLFYEASVAGGIPILRTIVNSLAADKIQKVMGIVNGTTNFMLTKMTTEKKSYEDVLAEAQALGFAESDPTNDVDGIDAARKMVIMTRLAFGMNVNLDNVETNGIRGISPEDIEVAYQLGYKIKLVGTAEETNGTVNVNVGPVLLPKAHPLAGVNYENNAVFVTGAAVGETMFYGPGAGELPTATSVVSDLITVAKNSRLGTNGNAFNSYKHETKHTPKEQVFSKYYLRLTMDDKTGTFLKLTQIFAEAGVGFDKILQQPYDDFTATVVIVTHSTSQAQLEQAIARVKDEPEMQMLAKYSVVEG |
| 3DO5 Chain:A ((2-325)) | ---MIKIAIVGFGTVGQGVAELLIRKREEIEKA-IGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDVLIEASVTR-E-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANT-IGVKASYEDVEVTGITQITPEAFQVAAEKGYTIRLIAEVSR----EKLKVSPRLVPFHHPLA-IKGTMNAAMFKTDTAGSIFVAGRGAGKEETASAILSDLYEIYAG----------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DO5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199804 for 2657 contacts (-75.2/contact) +
2D Compatibility (PS) -32855 + (NN) 325 + (LL) 8312
1D Compatibility (HY) -22800 + (ID) 5500
Total energy: -252322.0 ( -94.96 by residue)
QMean score : 0.413
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