Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4QBH Chain:B ((1-215))
MNLVLMGLPGAGKGTQAERIVEAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLGKDDCERGFLLDGFPRTVAQAEALEEILEEIGRPIDYVIHIEVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEETVAKRLEVNMKQMKPLLDFYEQKGYLRNVNGQQDMQDVFADVRELLGGL
General information:
TITO was launched using:
RESULT:
Template:
4QBH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60978 for 1690 contacts (-36.1/contact) +
2D Compatibility (PS) -23475 + (NN) -15189 + (LL) 0
1D Compatibility (HY) -25200 + (ID) 7350
Total energy: -132192.0 ( -78.22 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_4QBH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QBH-query.scw
PDB file :
Tito_Scwrl_4QBH.pdb
: