Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEK-----TSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKK-NGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
1XZW Chain:A ((124-331)) | ------------------------------------DVPYVFGLIGDIGQTHDSN-----------------------TTLTHYEQN--SAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSV-AYQPWIWTAGNHEIDYAPDIG------------EYQPFVPFTNRYPTPHEASGSGDPLWYAIKR-ASAHIIVLSSYSGF------------VKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYM-EGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSER--------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XZW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69348 for 1547 contacts (-44.8/contact) +
2D Compatibility (PS) -21370 + (NN) -3101 + (LL) 11700
1D Compatibility (HY) -4000 + (ID) 1350
Total energy: -87469.0 ( -56.54 by residue)
QMean score : 0.369
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