Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKPYGVVIISHSKDVAKGVHDIIKEIAPD--VSITHAGGTEDGRIGTSFDAVNEAIEN-NEANKVYTFYDLGSAKMNIETVEEISEK----EIILFNAPILEGAYATAAQVQMDEKPEVIAANLKTIEIK
3B48 Chain:A ((1-129))
--MKADILLVSHSKMITDGIKEMIEQMN--EEITIHSLGGTSDGSLGSDPMKIIDTINEADSDREFLIFADLGSAVLSSELAFDMLEEDQQKHYHLVDAPLVEGAFASAITAG-SDDLTQILAEAQNAGKK
General information:
TITO was launched using:
RESULT:
Template:
3B48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 36543 for 804 contacts (45.5/contact) +
2D Compatibility (PS) -11483 + (NN) 5214 + (LL) 344
1D Compatibility (HY) 8000 + (ID) 450
Total energy: 38168.0 ( 47.47 by residue)
QMean score : -0.061
(partial model without unconserved sides chains):
PDB file :
Tito_3B48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B48-query.scw
PDB file :
Tito_Scwrl_3B48.pdb
: