Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSPEDF-PVSLALLGKI-QVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVISH-TGEGLFADLEPAFQVTRYHSLVIDPTTVPVNLKVTAVTEDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFVRLGRNVK
2VPI Chain:A ((27-214))
AVVILDAGAQYGKVIDRRVRELFVQSEIFPLET-PAFAIKEQGFRAIIISG--------APWFDPAIF-TIGKPVLGICYGMQMMNKVFGGTVHKKSVREDG-VFNISVDNTCSLFRGLQKEEVVLLTHGDSVD--KVADGFKVVARSG-NIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCS
General information:
TITO was launched using:
RESULT:
Template:
2VPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161460 for 1508 contacts (-107.1/contact) +
2D Compatibility (PS) -19258 + (NN) -6827 + (LL) -396
1D Compatibility (HY) -8000 + (ID) 2350
Total energy: -198291.0 ( -131.49 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_2VPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VPI-query.scw
PDB file :
Tito_Scwrl_2VPI.pdb
: