Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGNSVMEKIKGGLVVSCQALEDEPLHSA--FIMSKMALAAVQGGAVGIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLKEVREICETGVEIVAMDATTRKRPHNEDLKDILSAIRKEFPNTLFMADTASIEDVYYADSLGFDLIGTTLYGYTEETANKNISDDDFSHL-KEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQEITTRFTNEIQKIQEERGK
1YXY Chain:A ((7-233))
-KEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPY--SRQEAGPDVALIEA--LCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPKEIAERFIEALK--------
General information:
TITO was launched using:
RESULT:
Template:
1YXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129779 for 1864 contacts (-69.6/contact) +
2D Compatibility (PS) -24208 + (NN) -12616 + (LL) 1272
1D Compatibility (HY) -20400 + (ID) 4900
Total energy: -190631.0 ( -102.27 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1YXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YXY-query.scw
PDB file :
Tito_Scwrl_1YXY.pdb
: