Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKYLKVSRIIKRRPVAKEVADKGRVKVNGVLAK-SSTDLKLNDQVEIRFGN----KLLTVKVLEMKDSTKKEDAIKMYEIINETRIETDEQA
1KSK Chain:A ((4-73))
MRLDKFIAQQLGVSRA-IAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK
General information:
TITO was launched using:
RESULT:
Template:
1KSK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -575 for 356 contacts (-1.6/contact) +
2D Compatibility (PS) -6826 + (NN) 1967 + (LL) -140
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -8674.0 ( -24.37 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1KSK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KSK-query.scw
PDB file :
Tito_Scwrl_1KSK.pdb
: