Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYV-NNQYDSMFQTQVDTISG-----MHW---------DMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDAY--DYKHDAAIVYA-E-QPFIMIIFTDKSS------YDDITKIADDVYQVLK |
| 1BUE Chain:A ((30-291)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDEIKNLETD--FNGRIGVYALDTGSGKSFSYRANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSL-------EFHSPITTKY-KDNGMSLGDMAAAALQYSDNGATNIILE-YIGGP--EGMTKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAAVAKSLKTLALGNILSEHEKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYTTKNEKEAKHEDKVIAEASRIAIDNLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BUE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -76139 for 1904 contacts (-40.0/contact) +
2D Compatibility (PS) -24143 + (NN) -6021 + (LL) 13840
1D Compatibility (HY) -3200 + (ID) 2000
Total energy: -97663.0 ( -51.29 by residue)
QMean score : 0.438
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