Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNFKITRTHLEILSLIIIVVFGLSVFTLTTSSQGVLSYDGGKIKYVGSIVNHHMTGKGKL--TY--ENGDY-------YKG--DFVNGVFEGKGTFVSVHGWSYTGDFKKGQPDGQGRLNAKNKKVYKGTFKQGIYQK
1KEK Chain:B ((448-538))
--------------------------------AQGYFSYDSKKSG--GITISHLRFGEKPIQSTYLVNRADYVACHNPAYVGIYDILEGIKDG-GTFVLNSPWSSLEDMDKHLPSGIKRTIA-NKKLKFYNIDAVKIAT
General information:
TITO was launched using:
RESULT:
Template:
1KEK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6689 for 369 contacts (18.1/contact) +
2D Compatibility (PS) -8555 + (NN) -3846 + (LL) 3792
1D Compatibility (HY) -3600 + (ID) 1650
Total energy: -7170.0 ( -19.43 by residue)
QMean score : -0.001
(partial model without unconserved sides chains):
PDB file :
Tito_1KEK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KEK-query.scw
PDB file :
Tito_Scwrl_1KEK.pdb
: