Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRIKWFSLVRITGLLLVLLYHFFKNSFPGGFVGVDIFFTFSGFLITALLIDEFSKTKKIDFVSFCRRRFYRIFPPLVLMVLVTIPFVFLVKSDFRASIGSQIMTALGFTSNFYEILTGGNYESQFIPHLFVHTWSLSIEVHFYVLWGLTVWLLSKRSKDQKQLRGTLFLISMGVFGVSFLTMFVRAFFVDNFSTIYFSTLSHIFPFFLGAMVATISGIREITGRFKKNIKNLTLKHNLIMMGSAFAGLMILTFALDFDNRLTYLFGFVLSSIFASVMIYNARILHEHTPDISEPFVITYLADISYGMYLFHWPFYIIFSRLSPNWIAVILTVVLSAVFSTLSFYIIEPFILGRKPKFLDYEFDLLPYKKWLFSIGGVLTLITVVTMLTAPSIGSFETELLQNSLQQARTNTNRTHTLAAGDAGALSDVTVIGDSVALRSSAAFN-KLLP-------EVQL--DA--AVSRNFSKSFDIFENRIQNKALSKIVVLAVGVNSLDN------YKTDLSQFIKSLP---KGHRLIIVTPYNAK-----N---MSQVTTVRDYELSLMK-----KYNYITVADWYKVATEHP---EIWGNTD--GVHYSDSDTTGADLYVSNVKKAIQKSAQRAAK |
| 3SKV Chain:A ((182-378)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSSKPHWIHYGDSICHGRGAASPSRTWLALAARAEGLDLQSLSFAADGSHLQPM---FARLIR-DLPADLISLRVGTSNFMDGDGFVDFPANLVGFVQIIRERHPLTPIVLGSSVYSPFWDELPADDKPTVADYREQVVKVAELLRKHGDQNVHYLDGMRVWGPERGMELYLEKPDKYPTHPNA-V--GHEIFAESSRREMAALGVLPVR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80830 for 1143 contacts (-70.7/contact) +
2D Compatibility (PS) -16718 + (NN) -838 + (LL) 35312
1D Compatibility (HY) -6400 + (ID) 1050
Total energy: -70524.0 ( -61.70 by residue)
QMean score : 0.449
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