Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTGILNSHLAKLADDLGHTDRVCIGDLGLPVPNGIPKIDLSLTSGIPSFQEVLDIYLENILVEKVILAEEIKEANPDQLSRLLAKLDNSVSIEYVSHDHLKQMTQDVKAVIRTGENTPYSNIILQSGVII
1OGD Chain:E ((1-131))
MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQEN-AKFLENLFSEQEIEYLSHEEFKLLTKDAKAVIRTGEFTPYANCILQAGVLF
General information:
TITO was launched using:
RESULT:
Template:
1OGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73126 for 992 contacts (-73.7/contact) +
2D Compatibility (PS) -14468 + (NN) -9216 + (LL) 176
1D Compatibility (HY) -13200 + (ID) 3700
Total energy: -113534.0 ( -114.45 by residue)
QMean score : 0.671
(partial model without unconserved sides chains):
PDB file :
Tito_1OGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OGD-query.scw
PDB file :
Tito_Scwrl_1OGD.pdb
: