Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKESFKLIATAAAGLEAIVGREIRNL----GID--CQ----VENGRVRFHGD-------------IKTIIETNLWLRAADRIKIIVGEFPAR---------TFEELFQGVYGLDWENYLPLGAKFPIAKAKCVKSKLHNEPSVQAISKKAVAKKLQKVFHRPEGVPLQENGAEFKIEVSILKDKATVMIDTTGS-SLFKRGYRAEKGGAPIKENMAAAIIQLSNWFPDKPLIDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEAWPWVDQSQVQKVRDEAESKANYDIDLDISGFDLDGRMVEIARKNAEEAGLGDVIKLKQMRLQDLKTD-KINGVIISNPPYGERLLDDKAVDI----LYNEMGQTFAPLKTWSKFILTSDEGFE---KKYGSQADKKRKLYNGTLKVDLYQYYGERVRRQVK |
| 3TM4 Chain:A ((1-365)) | ----MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAVRS-FRKGDHNITSIDIARTVGEAIFERLSRF-G-TPLVNL--DHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAEL-DGGSVLDPMCGSGTILIELALRRY--------------------------------------SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG------SMIPDLYMKFFNELAKVLE--KRGVFIT-TEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVKLEHHH---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118240 for 2604 contacts (-45.4/contact) +
2D Compatibility (PS) -34577 + (NN) -11084 + (LL) 4372
1D Compatibility (HY) -16800 + (ID) 4150
Total energy: -180479.0 ( -69.31 by residue)
QMean score : 0.441
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