Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEVVVESFELDHTIVKAPYVRLISEEVGPVGDIITNFDIRLIQPNENAIDTAGLHTIEHLLAKLIRQRI--N--GLIDCSPFGCRTGFHMIMWGKQDATEIAKVIKSSLEAIAGGVTWEDVPGTTIESCGNYKDHSLHSAQEWAKLILSQGISDNAFERHIV
1J6W Chain:A ((3-155))
-----LLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLSL
General information:
TITO was launched using:
RESULT:
Template:
1J6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78753 for 1094 contacts (-72.0/contact) +
2D Compatibility (PS) -15694 + (NN) -4671 + (LL) 620
1D Compatibility (HY) -13200 + (ID) 2800
Total energy: -114498.0 ( -104.66 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_1J6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J6W-query.scw
PDB file :
Tito_Scwrl_1J6W.pdb
: