Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTVKVVYFSSKSNNTHRFVQKLA--WS---NQRIPSDG-SNILVTEDYILIVPTYAGGGDDTKGAVPKQVVQFLNVRQ---NREHCQGVISSGNTN-FGDTYAIAGPIIARKLN-VPLLH---------------------QFEL--LGTQ-EDVTRVKELLCQFTRKDK
2BMV Chain:A ((2-163))
---GKIGIFFGTDSGNAEAIAEKISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAG------DLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSFA
General information:
TITO was launched using:
RESULT:
Template:
2BMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64723 for 998 contacts (-64.9/contact) +
2D Compatibility (PS) -13567 + (NN) -4842 + (LL) -276
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -89158.0 ( -89.34 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_2BMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BMV-query.scw
PDB file :
Tito_Scwrl_2BMV.pdb
: