Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYIEKIEANKVLDLKQIVPIEEEQMLSKTLVQRKDLGMTVFSLDKGQEIG--RHSSPGDAMVNILSGLAQITIDQD--KFDVAAGECIVMPANIPHSLYAK-E--AFQMLLVVVKPEV
2OPK Chain:A ((19-111))
------------------------DEIFQPLLERKGLKIERIISNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVHCDA--
General information:
TITO was launched using:
RESULT:
Template:
2OPK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50538 for 560 contacts (-90.2/contact) +
2D Compatibility (PS) -9198 + (NN) 1521 + (LL) 2800
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -60765.0 ( -108.51 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_2OPK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OPK-query.scw
PDB file :
Tito_Scwrl_2OPK.pdb
: