Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLSKKLLFSAAVLTMVAGSTVEPVAQFATGMSIVRAAEVSQERPAKTTVNIYKLQADSYKSEITSNGGIENKDGEVISNY-AKLGDNVKGLQGVQFKRYKVKTDISVDELKKLTTVEAADAKVGTILEEGVSLPQKTNAQGLVVDA---LDSKSNVRYLYVEDLKNSPSNI--------TKAYAVPFVLELPVANSTGTGFLSEINIYPKNVVTDEPKTDKDVKKLG---------QDDAGYTIGEEFKWFLKSTIPANLGDYEKFEITDKFADGLTYKS-VGKIKIGSKTLNRDEHYTIDEPTVDNQNTLKITFKPEKFKEIAELLKGMTLVKNQDALDKATANTDDAAFLEIPVASTINEKAVLGKAIENTFELQYDHTPDKADNPKP---------------------------------------------------------------------------------------------------SNPPRKPEVHTGGKRFVKKDSTETQTLGGAEFDLLASDGTA--VKWTDAL---------------------------------IKANT--------------NK-NYIAGEA-VTGQPIKLKSHTDGTFEIKGLAYAVDANAEGTAVTYKLKETKAPEGYVIPDKEIEFTVSQTSYNTKPTDI--TVDSADATPDTIKNNKRPSIPNTGGIGTAIFVAIGAAVMAFAVKGMKRRTKDN |
| 2Y1V Chain:A ((3-604)) | -------------------------------------------GTTTTSVTVHKLLATDGD--MDKIA-NELETGNYAGNKVGVLPANAKEIAGVMFVWTNTNNEIIDENGQTLGVNIDPQTFKLSGAMPATAMKKLTEAEG-AKFNTANLP---AAKYKIYEI--HSLSTYVGEDGATLTGSKAVPIEIELPLND------VVDAHVYPKNTEA-KPKIDKDFKGKANPDTPRVDKDTPVNHQVGDVVEYEIVTKIPAL-ANYATANWSDRMTEGLAFNKGTVKVTVDDV-ALEAGDYALTEV----ATGFDLKLTDAGLAKVNDQ------------------NAEKT--VKITYSATLNDKAIVEVPESNDVTFNYGNNPDHGNTPKPNKPNENGDLTLTKTWVDATGAPIPAGAEATFDLVNAQTGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSADYQEITTAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVNDK-DNRLAGAEFVIANADNAGQYLARKADKVSQEEKQLVVTTKDALDRAVAAYNALTAQQQTQQEKEKVDKAQAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRFEITGLLAG----------TYYLEETKQPAGYALLTSRQKFEVTATSYSATGQGIEYTAGSGKDDATKVVNK-KITIPQTG----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y1V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 65476 for 3214 contacts (20.4/contact) +
2D Compatibility (PS) -43647 + (NN) 11852 + (LL) 9608
1D Compatibility (HY) -14000 + (ID) 5550
Total energy: 23739.0 ( 7.39 by residue)
QMean score : 0.240
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