Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSSFYKQRKGKLVCGVVAGLADKYNWDLALSRVLIALILYFTKFGLLLYILLAVFLPYKEDIIETRRQGPRRRKDAEPVDDDGWFW
2K8O Chain:A ((1-60))
LKVGFF-KRNLKEKIEAGRGVPNGIP------------------------AEDSEQLASGQEAGDPGCLKPLHEKDSESGGGKDG--
General information:
TITO was launched using:
RESULT:
Template:
2K8O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14748 for 417 contacts (35.4/contact) +
2D Compatibility (PS) -6205 + (NN) 63 + (LL) 3192
1D Compatibility (HY) 2800 + (ID) 500
Total energy: 14098.0 ( 33.81 by residue)
QMean score : -0.261
(partial model without unconserved sides chains):
PDB file :
Tito_2K8O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K8O-query.scw
PDB file :
Tito_Scwrl_2K8O.pdb
: