Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTRSKLAAGFLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTAKGYGNSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKKELTEANYKEAYKNYTPETSVQVIKLDAE--------DKAKSVLKDVKADGADFAKIAKEKTTATD--KKVEY-KFDSAGTSLPKEVMSAAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRSFQNKVISKALEKANVKIKDKAFAGILSQYATTSGSSSLKK |
| 3GPK Chain:A ((6-105)) | --------------------------------------------------------------------------------------------------------------------------------------------------EEYRIGEIFLAATEENKPQVFANAEKIVEQLK-QGGSFVAYARQYSEASTAAVGGDLGWIRL--AQLPTELATTAASMGPGQLAGPVEIRG------GFSILYLIDKREGHHHHHH---------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GPK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23594 for 648 contacts (-36.4/contact) +
2D Compatibility (PS) -9770 + (NN) -7176 + (LL) 14592
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -31698.0 ( -48.92 by residue)
QMean score : 0.617
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