Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTGASYPKYRFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTI--TGMNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
1MRL Chain:B ((62-198))
--------------------------------KIGKFCSIGPGVTIIMNGANHRMDG-STYPFNLFGNGWEKHMPKLDQLPIK--GDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIRE-------------
General information:
TITO was launched using:
RESULT:
Template:
1MRL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76483 for 850 contacts (-90.0/contact) +
2D Compatibility (PS) -14934 + (NN) -8008 + (LL) 2756
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -110519.0 ( -130.02 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_1MRL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MRL-query.scw
PDB file :
Tito_Scwrl_1MRL.pdb
: