Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRHEHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
3UDE Chain:A ((1-156))
-TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR---ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
3UDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132879 for 1140 contacts (-116.6/contact) +
2D Compatibility (PS) -15756 + (NN) -7403 + (LL) 1080
1D Compatibility (HY) -14000 + (ID) 3250
Total energy: -172208.0 ( -151.06 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_3UDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDE-query.scw
PDB file :
Tito_Scwrl_3UDE.pdb
: